mripy
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Contents:
Introduction
Installation (in linux/mac)
mripy package
GLM analysis for fMRI
mripy
mripy
Index
Edit on GitHub
Index
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E
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Q
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Z
A
AbstractBasicAuthHandler (mripy.six.Module_six_moves_urllib_request attribute)
AbstractDigestAuthHandler (mripy.six.Module_six_moves_urllib_request attribute)
add() (mripy.timecourse.Attributes method)
add_colormap() (in module mripy.afni)
add_event_attr() (mripy.timecourse.Epochs method)
add_feature_attr() (mripy.timecourse.Epochs method)
add_metaclass() (in module mripy.paraproc)
(in module mripy.six)
add_move() (in module mripy.six)
addbase (mripy.six.Module_six_moves_urllib_response attribute)
addclosehook (mripy.six.Module_six_moves_urllib_response attribute)
addinfo (mripy.six.Module_six_moves_urllib_response attribute)
addinfourl (mripy.six.Module_six_moves_urllib_response attribute)
afni2ants_affine() (in module mripy.preprocess)
afni2ants_warp() (in module mripy.preprocess)
afni_costs() (in module mripy.evaluation)
aggregate() (mripy.timecourse.Epochs method)
align_anat() (in module mripy.preprocess)
align_anat2epi() (in module mripy.preprocess)
align_ants() (in module mripy.preprocess)
align_center() (in module mripy.preprocess)
align_epi() (in module mripy.preprocess)
align_S2E() (in module mripy.preprocess)
all_finished() (in module mripy.preprocess)
all_successful() (mripy.paraproc.PooledCaller method)
ants2afni_affine() (in module mripy.preprocess)
ants2afni_warp() (in module mripy.preprocess)
ANTsTransform (class in mripy.preprocess)
apply() (mripy.preprocess.ANTsTransform method)
(mripy.preprocess.Transform method)
apply_affine() (in module mripy.math)
apply_ants() (in module mripy.preprocess)
apply_baseline() (mripy.timecourse.Epochs method)
apply_inverse() (mripy.preprocess.ANTsTransform method)
(mripy.preprocess.Transform method)
apply_inverse_to_points() (mripy.preprocess.ANTsTransform method)
apply_inverse_to_xyz() (mripy.preprocess.ANTsTransform method)
apply_to_points() (mripy.preprocess.ANTsTransform method)
apply_to_xyz() (mripy.preprocess.ANTsTransform method)
apply_transforms() (in module mripy.preprocess)
argsort_rows() (in module mripy.math)
array2dataframe() (in module mripy.math)
ArrayWrapper (class in mripy.paraproc)
assertCountEqual() (in module mripy.six)
assertRaisesRegex() (in module mripy.six)
assertRegex() (in module mripy.six)
assign_mp2rage_labels() (in module mripy.preprocess)
Attributes (class in mripy.timecourse)
average() (mripy.timecourse.Epochs method)
average_anat() (in module mripy.preprocess)
B
b() (in module mripy.six)
ball() (mripy.io.Mask method)
BallMask (class in mripy.io)
BaseHandler (mripy.six.Module_six_moves_urllib_request attribute)
BaseModel (class in mripy.encoding)
basis_Sprague2013() (in module mripy.encoding)
basis_vanBergen2015() (in module mripy.encoding)
bayesian_inversion() (mripy.encoding.BayesianChannelModel method)
BayesianChannelModel (class in mripy.encoding)
blip_unwarp() (in module mripy.preprocess)
build_opener (mripy.six.Module_six_moves_urllib_request attribute)
C
CacheFTPHandler (mripy.six.Module_six_moves_urllib_request attribute)
CacheManager (class in mripy.utils)
calculate_min_patch() (in module mripy.preprocess)
call() (in module mripy.afni)
cd() (in module mripy.utils)
change_dim_order() (in module mripy.io)
change_space() (in module mripy.io)
channel_inversion() (mripy.encoding.ChannelEncodingModel method)
ChannelEncodingModel (class in mripy.encoding)
check_call() (mripy.utils.ParallelCaller method)
check_output() (in module mripy.afni)
check_output_for_errors() (in module mripy.paraproc)
check_output_for_goal() (in module mripy.paraproc)
circular_corrcoef() (in module mripy.math)
circular_correct() (in module mripy.encoding)
circular_mean() (in module mripy.math)
circular_std() (in module mripy.math)
clusterize() (in module mripy.preprocess)
cmd_for_disp() (in module mripy.paraproc)
cmd_for_exec() (in module mripy.paraproc)
collect_perblock_stats() (in module mripy.preprocess)
combine_affine_transforms() (in module mripy.preprocess)
combine_censors() (in module mripy.preprocess)
compatible() (mripy.io.Mask method)
compress() (in module mripy.io)
compute_critical_value() (in module mripy.decoding)
concat() (mripy.io.Mask class method)
concat_affine() (in module mripy.math)
concatinate() (mripy.timecourse.Attributes class method)
concatinate_epochs() (in module mripy.timecourse)
constrain() (mripy.io.Mask method)
contain_wildcard() (in module mripy.utils)
ContentTooShortError (mripy.six.Module_six_moves_urllib_error attribute)
convert_dicom() (in module mripy.io)
convert_dicoms() (in module mripy.io)
convolve_HRF() (in module mripy.timecourse)
copy() (mripy.timecourse.Epochs method)
(mripy.timecourse.Raw method)
copy_dset() (in module mripy.preprocess)
copy_S2E_mat() (in module mripy.preprocess)
corrcoef_along_axis() (in module mripy.math)
correct_bias_field() (in module mripy.preprocess)
correct_motion() (in module mripy.preprocess)
correlation_inversion() (mripy.encoding.ChannelEncodingModel method)
count_outliers() (in module mripy.preprocess)
create_base_corr_func() (in module mripy.timecourse)
create_brain_mask() (in module mripy.preprocess)
create_ERP() (in module mripy.timecourse)
create_extent_mask() (in module mripy.preprocess)
create_hcp_retinotopic_atlas() (in module mripy.preprocess)
create_ideal() (in module mripy.timecourse)
create_mp2rage_SNR_mask() (in module mripy.preprocess)
create_suma_dir() (in module mripy.preprocess)
create_suma_script() (in module mripy.preprocess)
create_times() (in module mripy.timecourse)
create_unbound_method() (in module mripy.six)
create_vessel_mask_BOLD() (in module mripy.preprocess)
create_vessel_mask_EPI() (in module mripy.preprocess)
create_vessel_mask_PDGRE() (in module mripy.preprocess)
cross_validate_ext() (in module mripy.decoding)
cross_validate_with_permutation() (in module mripy.decoding)
cut() (in module mripy.timecourse)
cutter() (in module mripy.timecourse)
cylinder() (mripy.io.Mask method)
CylinderMask (class in mripy.io)
D
decompress() (in module mripy.io)
Demeaner (class in mripy.decoding)
deoblique() (in module mripy.preprocess)
detrend() (in module mripy.preprocess)
discretize_prediction() (in module mripy.encoding)
dispatch() (mripy.paraproc.PooledCaller method)
DomainMapper (class in mripy.math)
draw_circle_arrow() (in module mripy.dcm)
draw_color_circle() (in module mripy.vis)
drop() (mripy.timecourse.Attributes method)
drop_all_with_axis() (mripy.timecourse.Attributes method)
drop_events() (mripy.timecourse.Epochs method)
dtype2ctypes (mripy.paraproc.SharedMemoryArray attribute)
dump() (mripy.io.Mask method)
(mripy.io.MaskDumper method)
E
EnsembleModel (class in mripy.encoding)
Epochs (class in mripy.timecourse)
error (mripy.six.Module_six_moves_urllib attribute)
events_from_dataframe() (in module mripy.timecourse)
events_to_dataframe() (in module mripy.timecourse)
Evoked (class in mripy.timecourse)
exists() (in module mripy.utils)
(mripy.utils.CacheManager method)
expand_index_list() (in module mripy.utils)
ExtendedCircle (class in mripy.dcm)
ExtendedSimple (class in mripy.dcm)
extract_physio() (in module mripy.io)
F
factorize() (in module mripy.utils)
FancyURLopener (mripy.six.Module_six_moves_urllib_request attribute)
FileHandler (mripy.six.Module_six_moves_urllib_request attribute)
FilenameManager (class in mripy.utils)
filter_cluster() (in module mripy.io)
filter_dicom_files() (in module mripy.io)
filter_output() (in module mripy.afni)
find_best_reverse() (in module mripy.preprocess)
find_epi_dark_voxel_threshold() (in module mripy.preprocess)
first_peak() (in module mripy.timecourse)
fit() (mripy.decoding.Demeaner method)
(mripy.encoding.BayesianChannelModel method)
(mripy.encoding.ChannelEncodingModel method)
(mripy.encoding.EnsembleModel method)
fmt2kws() (mripy.utils.FilenameManager class method)
fname_with_ext() (in module mripy.utils)
format() (mripy.utils.FilenameManager method)
format_duration() (in module mripy.paraproc)
from2pi() (mripy.math.DomainMapper method)
from_align_ants() (mripy.preprocess.ANTsTransform class method)
from_array() (mripy.paraproc.SharedMemoryArray class method)
(mripy.timecourse.Epochs class method)
(mripy.timecourse.Raw class method)
from_dict() (mripy.encoding.BaseModel method)
(mripy.encoding.EnsembleModel method)
(mripy.io.Mask class method)
(mripy.timecourse.Attributes class method)
(mripy.timecourse.Epochs class method)
(mripy.timecourse.Raw class method)
(mripy.timecourse.RawCache class method)
(mripy.utils.Savable class method)
from_expr() (mripy.io.Mask class method)
from_files() (mripy.io.Mask class method)
from_glob() (mripy.utils.FilenameManager class method)
from_json() (mripy.preprocess.Transform class method)
fs_recon() (in module mripy.preprocess)
FTPHandler (mripy.six.Module_six_moves_urllib_request attribute)
G
gaussian_logpdf() (in module mripy.math)
generate_afni_idcode() (in module mripy.io)
generate_spec() (in module mripy.afni)
get_affine() (in module mripy.afni)
get_affine_nifti() (in module mripy.afni)
get_attribute() (in module mripy.afni)
get_brick_labels() (in module mripy.afni)
get_censor_from_X() (in module mripy.afni)
get_color_list() (in module mripy.vis)
get_crop() (in module mripy.afni)
get_DELTA() (in module mripy.afni)
get_dim_order() (in module mripy.io)
get_DIMENSION() (in module mripy.afni)
get_dims() (in module mripy.afni)
get_epochs() (mripy.timecourse.RawCache method)
get_head_delta() (in module mripy.afni)
get_head_dims() (in module mripy.afni)
get_head_extents() (in module mripy.afni)
get_hemi() (in module mripy.afni)
get_HRF() (in module mripy.timecourse)
get_ni_type() (in module mripy.io)
get_nifti_field() (in module mripy.afni)
get_ORIENT() (in module mripy.afni)
get_ORIGIN() (in module mripy.afni)
get_params() (mripy.encoding.BaseModel method)
(mripy.encoding.BayesianChannelModel method)
(mripy.encoding.ChannelEncodingModel method)
(mripy.encoding.EnsembleModel method)
get_prefix() (in module mripy.afni)
get_raws() (mripy.timecourse.RawCache method)
get_runs_from_X() (in module mripy.afni)
get_S2E_mat() (in module mripy.afni)
get_slice_timing() (in module mripy.afni)
get_space() (in module mripy.io)
get_subbrick_selector() (in module mripy.afni)
get_suma_info() (in module mripy.afni)
get_suma_spec() (in module mripy.afni)
get_suma_subj() (in module mripy.afni)
get_surf_type() (in module mripy.afni)
get_surf_vol() (in module mripy.afni)
get_TR() (in module mripy.afni)
get_unbound_function() (in module mripy.six)
getproxies (mripy.six.Module_six_moves_urllib_request attribute)
glm() (in module mripy.preprocess)
glob() (mripy.utils.FilenameManager method)
group_epochs() (in module mripy.timecourse)
H
has_ants() (in module mripy.utils)
has_hcp_retino_docker() (in module mripy.utils)
has_N4() (in module mripy.utils)
hms2dt() (in module mripy.io)
HTTPBasicAuthHandler (mripy.six.Module_six_moves_urllib_request attribute)
HTTPCookieProcessor (mripy.six.Module_six_moves_urllib_request attribute)
HTTPDefaultErrorHandler (mripy.six.Module_six_moves_urllib_request attribute)
HTTPDigestAuthHandler (mripy.six.Module_six_moves_urllib_request attribute)
HTTPError (mripy.six.Module_six_moves_urllib_error attribute)
HTTPErrorProcessor (mripy.six.Module_six_moves_urllib_request attribute)
HTTPHandler (mripy.six.Module_six_moves_urllib_request attribute)
HTTPPasswordMgr (mripy.six.Module_six_moves_urllib_request attribute)
HTTPPasswordMgrWithDefaultRealm (mripy.six.Module_six_moves_urllib_request attribute)
HTTPRedirectHandler (mripy.six.Module_six_moves_urllib_request attribute)
HTTPSHandler (mripy.six.Module_six_moves_urllib_request attribute)
I
idss() (mripy.paraproc.PooledCaller method)
ijk (mripy.io.Mask property)
infer_selector() (mripy.io.Mask method)
infer_surf_dset_variants() (in module mripy.afni)
insert_suffix() (in module mripy.afni)
inspect_mp2rage() (in module mripy.dicom_report)
install_opener (mripy.six.Module_six_moves_urllib_request attribute)
int2byte() (in module mripy.six)
inverse() (mripy.preprocess.Transform method)
invert_affine() (in module mripy.math)
inverted_encoding() (mripy.encoding.ChannelEncodingModel method)
irregular_resample() (in module mripy.preprocess)
is_affine_transform() (in module mripy.preprocess)
iterable() (in module mripy.utils)
iteritems() (in module mripy.six)
iterkeys() (in module mripy.six)
iterlists() (in module mripy.six)
itervalues() (in module mripy.six)
K
kwargs_updated() (mripy.utils.CacheManager method)
L
load() (mripy.utils.Savable class method)
(mripy.utils.Savable2 method)
load_contexts() (mripy.utils.CacheManager method)
loglikelihood() (mripy.encoding.BayesianChannelModel method)
LPI2RAI_affine() (in module mripy.math)
M
manual_transform() (in module mripy.preprocess)
Mask (class in mripy.io)
MaskDumper (class in mripy.io)
match_physio_with_series() (in module mripy.io)
median_argmax() (in module mripy.math)
mmn2dt() (in module mripy.io)
module
mripy
mripy.afni
mripy.dcm
mripy.decoding
mripy.dicom
mripy.dicom_report
mripy.encoding
mripy.evaluation
mripy.io
mripy.io.freesurfer
mripy.io.gifti
mripy.io.niml
mripy.math
mripy.paraproc
mripy.preprocess
mripy.six
mripy.tests
mripy.tests.context
mripy.tests.test_afni
mripy.tests.test_io
mripy.tests.test_timecourse
mripy.tests.test_utils
mripy.tests.test_utils_slow
mripy.timecourse
mripy.utils
mripy.vis
Module_six_moves_urllib (class in mripy.six)
Module_six_moves_urllib_error (class in mripy.six)
Module_six_moves_urllib_parse (class in mripy.six)
Module_six_moves_urllib_request (class in mripy.six)
Module_six_moves_urllib_response (class in mripy.six)
Module_six_moves_urllib_robotparser (class in mripy.six)
MovedAttribute (class in mripy.six)
MovedModule (class in mripy.six)
mripy
module
mripy.afni
module
mripy.dcm
module
mripy.decoding
module
mripy.dicom
module
mripy.dicom_report
module
mripy.encoding
module
mripy.evaluation
module
mripy.io
module
mripy.io.freesurfer
module
mripy.io.gifti
module
mripy.io.niml
module
mripy.math
module
mripy.paraproc
module
mripy.preprocess
module
mripy.six
module
mripy.tests
module
mripy.tests.context
module
mripy.tests.test_afni
module
mripy.tests.test_io
module
mripy.tests.test_timecourse
module
mripy.tests.test_utils
module
mripy.tests.test_utils_slow
module
mripy.timecourse
module
mripy.utils
module
mripy.vis
module
N
n_events (mripy.timecourse.Epochs property)
n_features (mripy.timecourse.Epochs property)
(mripy.timecourse.Raw property)
n_runs (mripy.timecourse.RawCache property)
n_times (mripy.timecourse.Epochs property)
(mripy.timecourse.Raw property)
names_with_axis() (mripy.timecourse.Attributes method)
near() (mripy.io.Mask method)
nearest() (in module mripy.math)
normalize_logP() (in module mripy.math)
nudge_cmd2mat() (in module mripy.preprocess)
O
Omega_ (mripy.encoding.BayesianChannelModel property)
Omega_inv_ (mripy.encoding.BayesianChannelModel property)
OpenerDirector (mripy.six.Module_six_moves_urllib_request attribute)
P
parallel_1D() (in module mripy.utils)
parallel_3D() (in module mripy.utils)
ParallelCaller (class in mripy.utils)
pares_patent_age() (in module mripy.dicom_report)
parse (mripy.six.Module_six_moves_urllib attribute)
parse() (mripy.utils.FilenameManager method)
parse_attr() (in module mripy.io.niml)
parse_data() (in module mripy.io.niml)
parse_data_format() (in module mripy.io.niml)
parse_dicom_header() (in module mripy.dicom)
(in module mripy.io)
parse_ni_type() (in module mripy.io.niml)
parse_niml() (in module mripy.io.niml)
parse_patch() (in module mripy.afni)
parse_physio_file() (in module mripy.io)
parse_physio_files() (in module mripy.io)
parse_qs (mripy.six.Module_six_moves_urllib_parse attribute)
parse_qsl (mripy.six.Module_six_moves_urllib_parse attribute)
parse_seq_info() (in module mripy.preprocess)
parse_series_info() (in module mripy.dicom)
(in module mripy.io)
parse_Siemens_CSA() (in module mripy.dicom)
parse_Siemens_CSA2() (in module mripy.dicom)
parse_slice_order() (in module mripy.io)
parse_SQ_data_element() (in module mripy.dicom)
ParseResult (mripy.six.Module_six_moves_urllib_parse attribute)
patch_afni_proc() (in module mripy.afni)
pathname2url (mripy.six.Module_six_moves_urllib_request attribute)
permute_within_group() (in module mripy.decoding)
pick() (mripy.io.Mask method)
(mripy.timecourse.Attributes method)
(mripy.timecourse.Epochs method)
pinv() (in module mripy.math)
plot() (mripy.timecourse.Epochs method)
(mripy.timecourse.Evoked method)
(mripy.timecourse.Raw method)
plot_dcm() (in module mripy.dcm)
plot_peb_bma() (in module mripy.dcm)
plot_volreg() (in module mripy.vis)
polyfit3d() (in module mripy.math)
PooledCaller (class in mripy.paraproc)
predict() (mripy.encoding.BayesianChannelModel method)
(mripy.encoding.ChannelEncodingModel method)
(mripy.encoding.EnsembleModel method)
prep_mp2rage() (in module mripy.preprocess)
prep_mp2rages() (in module mripy.preprocess)
pRF() (mripy.encoding.ChannelEncodingModel method)
print_subject_info() (in module mripy.dicom_report)
proxy_bypass (mripy.six.Module_six_moves_urllib_request attribute)
ProxyBasicAuthHandler (mripy.six.Module_six_moves_urllib_request attribute)
ProxyDigestAuthHandler (mripy.six.Module_six_moves_urllib_request attribute)
ProxyHandler (mripy.six.Module_six_moves_urllib_request attribute)
python_2_unicode_compatible() (in module mripy.six)
Q
qcut() (in module mripy.timecourse)
qcutter() (in module mripy.timecourse)
quote (mripy.six.Module_six_moves_urllib_parse attribute)
quote_plus (mripy.six.Module_six_moves_urllib_parse attribute)
R
RAI2LPI_affine() (in module mripy.math)
raise_from() (in module mripy.six)
Raw (class in mripy.timecourse)
RawCache (class in mripy.timecourse)
read_affine() (in module mripy.io)
read_afni() (in module mripy.io)
read_asc() (in module mripy.io)
read_events() (in module mripy.timecourse)
read_fs_annotation() (in module mripy.io.freesurfer)
read_fs_curv() (in module mripy.io.freesurfer)
read_fs_int32() (in module mripy.io.freesurfer)
read_fs_patch() (in module mripy.io.freesurfer)
read_fs_str() (in module mripy.io.freesurfer)
read_fs_surf() (in module mripy.io.freesurfer)
read_fs_uint24() (in module mripy.io.freesurfer)
read_gii() (in module mripy.io)
read_gii_dset() (in module mripy.io.gifti)
read_label() (in module mripy.io)
read_nii() (in module mripy.io)
read_niml_bin_nodes() (in module mripy.io)
read_niml_dset() (in module mripy.io)
read_patch_asc() (in module mripy.io)
read_register_dat() (in module mripy.io)
read_stim() (in module mripy.io)
read_surf_data() (in module mripy.io)
read_surf_info() (in module mripy.io)
read_surf_mesh() (in module mripy.io)
read_txt() (in module mripy.io)
read_until() (in module mripy.io.niml)
read_vol() (in module mripy.io)
read_warp() (in module mripy.io)
rebase() (mripy.preprocess.Transform method)
remove_duplicate_parts() (in module mripy.dicom_report)
remove_move() (in module mripy.six)
replace_path() (mripy.preprocess.Transform method)
report_parameters() (in module mripy.dicom_report)
request (mripy.six.Module_six_moves_urllib attribute)
Request (mripy.six.Module_six_moves_urllib_request attribute)
reraise() (in module mripy.six)
resample() (in module mripy.preprocess)
resample_to_surface() (in module mripy.preprocess)
residual_motion() (in module mripy.evaluation)
response (mripy.six.Module_six_moves_urllib attribute)
retrieve_mp2rage_labels() (in module mripy.preprocess)
RobotFileParser (mripy.six.Module_six_moves_urllib_robotparser attribute)
robotparser (mripy.six.Module_six_moves_urllib attribute)
run() (in module mripy.paraproc)
(mripy.paraproc.PooledCaller method)
run1() (mripy.paraproc.PooledCaller method)
S
Savable (class in mripy.utils)
Savable2 (class in mripy.utils)
save() (mripy.utils.Savable method)
(mripy.utils.Savable2 method)
save_contexts() (mripy.utils.CacheManager method)
scale() (in module mripy.preprocess)
select_and_replace_affix() (in module mripy.utils)
set_attribute() (in module mripy.afni)
set_brick_labels() (in module mripy.afni)
set_nifti_field() (in module mripy.afni)
set_params() (mripy.encoding.BaseModel method)
set_slice_timing() (in module mripy.afni)
setUp() (mripy.tests.test_timecourse.test_Attributes method)
(mripy.tests.test_timecourse.test_Epochs_Attributes method)
shape (mripy.timecourse.Attributes property)
(mripy.timecourse.Epochs property)
(mripy.timecourse.Evoked property)
(mripy.timecourse.Raw property)
SharedMemoryArray (class in mripy.paraproc)
shift_distribution() (in module mripy.encoding)
skullstrip() (in module mripy.preprocess)
slab() (mripy.io.Mask method)
SlabMask (class in mripy.io)
sort_dicom_series() (in module mripy.dicom)
(in module mripy.io)
split_out_file() (in module mripy.afni)
splitquery (mripy.six.Module_six_moves_urllib_parse attribute)
SplitResult (mripy.six.Module_six_moves_urllib_parse attribute)
splittag (mripy.six.Module_six_moves_urllib_parse attribute)
splituser (mripy.six.Module_six_moves_urllib_parse attribute)
splitvalue (mripy.six.Module_six_moves_urllib_parse attribute)
standardize_within_group() (in module mripy.decoding)
subset() (mripy.timecourse.RawCache method)
substitute_hemi() (in module mripy.afni)
summary() (mripy.timecourse.Epochs method)
T
TeeOut (class in mripy.paraproc)
temp_folder() (in module mripy.utils)
temp_prefix() (in module mripy.utils)
test_afni (class in mripy.tests.test_afni)
test_Attributes (class in mripy.tests.test_timecourse)
test_copy() (mripy.tests.test_timecourse.test_Attributes method)
(mripy.tests.test_timecourse.test_Epochs_Attributes method)
test_Epochs_Attributes (class in mripy.tests.test_timecourse)
test_fname_with_ext() (mripy.tests.test_utils.test_utils method)
test_get_affine() (mripy.tests.test_afni.test_afni method)
test_get_prefix() (mripy.tests.test_afni.test_afni method)
test_get_suma_spec() (mripy.tests.test_afni.test_afni method)
test_io (class in mripy.tests.test_io)
test_Mask() (mripy.tests.test_io.test_io method)
test_pick() (mripy.tests.test_timecourse.test_Attributes method)
(mripy.tests.test_timecourse.test_Epochs_Attributes method)
test_SharedMemoryArray_array() (mripy.tests.test_utils_slow.test_utils method)
test_SharedMemoryArray_CoW() (mripy.tests.test_utils_slow.test_utils method)
test_SharedMemoryArray_memory() (mripy.tests.test_utils_slow.test_utils method)
test_substitute_hemi() (mripy.tests.test_afni.test_afni method)
test_utils (class in mripy.tests.test_utils)
(class in mripy.tests.test_utils_slow)
to2pi() (mripy.math.DomainMapper method)
to_dict() (mripy.encoding.BaseModel method)
(mripy.encoding.EnsembleModel method)
(mripy.io.Mask method)
(mripy.timecourse.Attributes method)
(mripy.timecourse.Epochs method)
(mripy.timecourse.Raw method)
(mripy.timecourse.RawCache method)
(mripy.utils.Savable method)
to_file() (mripy.io.Mask method)
to_json() (mripy.preprocess.Transform method)
TR (mripy.timecourse.Raw property)
Transform (class in mripy.preprocess)
transform() (mripy.decoding.Demeaner method)
(mripy.timecourse.Epochs method)
transmute() (mripy.dcm.ExtendedCircle method)
(mripy.dcm.ExtendedSimple method)
tsarray2dataframe() (in module mripy.math)
U
u() (in module mripy.six)
undump() (mripy.io.Mask method)
(mripy.io.MaskDumper method)
unifize_epi() (in module mripy.preprocess)
UnknownHandler (mripy.six.Module_six_moves_urllib_request attribute)
unquote (mripy.six.Module_six_moves_urllib_parse attribute)
unquote_plus (mripy.six.Module_six_moves_urllib_parse attribute)
unquote_to_bytes (mripy.six.Module_six_moves_urllib_parse attribute)
unzipped (class in mripy.io)
update_afnirc() (in module mripy.afni)
url2pathname (mripy.six.Module_six_moves_urllib_request attribute)
urlcleanup (mripy.six.Module_six_moves_urllib_request attribute)
urldefrag (mripy.six.Module_six_moves_urllib_parse attribute)
urlencode (mripy.six.Module_six_moves_urllib_parse attribute)
URLError (mripy.six.Module_six_moves_urllib_error attribute)
urljoin (mripy.six.Module_six_moves_urllib_parse attribute)
urlopen (mripy.six.Module_six_moves_urllib_request attribute)
URLopener (mripy.six.Module_six_moves_urllib_request attribute)
urlparse (mripy.six.Module_six_moves_urllib_parse attribute)
urlretrieve (mripy.six.Module_six_moves_urllib_request attribute)
urlsplit (mripy.six.Module_six_moves_urllib_parse attribute)
urlunparse (mripy.six.Module_six_moves_urllib_parse attribute)
urlunsplit (mripy.six.Module_six_moves_urllib_parse attribute)
uses_fragment (mripy.six.Module_six_moves_urllib_parse attribute)
uses_netloc (mripy.six.Module_six_moves_urllib_parse attribute)
uses_params (mripy.six.Module_six_moves_urllib_parse attribute)
uses_query (mripy.six.Module_six_moves_urllib_parse attribute)
uses_relative (mripy.six.Module_six_moves_urllib_parse attribute)
V
voxel_inversion() (mripy.encoding.ChannelEncodingModel method)
W
wait() (mripy.paraproc.PooledCaller method)
(mripy.utils.ParallelCaller method)
watch_files_updated() (mripy.utils.CacheManager method)
wcut() (in module mripy.timecourse)
wcutter() (in module mripy.timecourse)
with_metaclass() (in module mripy.six)
write() (mripy.paraproc.TeeOut method)
write_1D_nodes() (in module mripy.io)
write_affine() (in module mripy.io)
write_afni() (in module mripy.io)
write_asc() (in module mripy.io)
write_colorscale_file() (in module mripy.afni)
write_fs_color_table() (in module mripy.io.freesurfer)
write_fs_curv() (in module mripy.io.freesurfer)
write_fs_int32() (in module mripy.io.freesurfer)
write_fs_uint24() (in module mripy.io.freesurfer)
write_gii() (in module mripy.io)
write_nii() (in module mripy.io)
write_niml_bin_nodes() (in module mripy.io)
write_surf_data() (in module mripy.io)
write_surf_mesh() (in module mripy.io)
write_vol() (in module mripy.io)
X
xyz (mripy.io.Mask property)
xyz2ijk() (in module mripy.afni)
xyz_nifti (mripy.io.Mask property)
Z
zeros() (mripy.paraproc.SharedMemoryArray class method)
zscore() (in module mripy.preprocess)
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